Mitch,
I would recommend a Viavi/JDSU or EXFO test set. They are designed to do this kind of testing. There are other cheaper alternatives out there as well. They will generate a constant stream of traffic and analyze it. You can test Head to Head or to a Ethernet Loopback (or loopback device such as an EtherNID). I understand why this testing is necessary, for those that do not get it. A BERT is still the gold standard for establishing network reliability. If you or a customer is paying for a 6 nines link it is a prolonged BERT that determines if they are getting what they are paying for. A RFC-2544, Y.1564, True SAM, and other test are helpful but a BER test will find problems they will not. This kind of test seems very necessary for a Ethernet link that goes through a satellite.
Tyler